Mulder2012

Predicting functional networks and modules of chromatin factors controlling adult stem cell fate from RNA interference screens

Bioconductor version: Development (3.0)

This package provides functions to reproduce results and figures in Mulder K. et. al. published in Nature Cell Biology 2012 and Wang X. et. al. published in PLoS Computational Biology 2012.

Author: Xin Wang <Xin.Wang at cancer.org.uk>, Florian Markowetz <Florian.Markowetz at cancer.org.uk>

Maintainer: Xin Wang <Xin.Wang at cancer.org.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Mulder2012")

To cite this package in a publication, start R and enter:

    citation("Mulder2012")

Documentation

PDF R Script Main vignette:Posterior association network and enriched functional gene modules inferred from rich phenotypes of gene perturbations
PDF   Reference Manual
Text   NEWS

Details

biocViews Bioinformatics, ExperimentData
Version 0.5.0
License Artistic-2.0
Depends R (>= 2.14), org.Hs.eg.db, KEGG.db
Imports igraph, HTSanalyzeR, PANR, RedeR, pvclust, MASS
Suggests snow
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source Mulder2012_0.5.0.tar.gz
Windows Binary Mulder2012_0.5.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) Mulder2012_0.5.0.tgz
Mac OS X 10.9 (Mavericks) Mulder2012_0.5.0.tgz
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