To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ABSSeq")

In most cases, you don't need to download the package archive at all.

ABSSeq

 

   

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Bioconductor version: Release (3.3)

Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.

Author: Wentao Yang

Maintainer: Wentao Yang <wyang at zoologie.uni-kiel.de>

Citation (from within R, enter citation("ABSSeq")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ABSSeq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ABSSeq")

 

PDF R Script ABSSeq
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, Software
Version 1.8.0
In Bioconductor since BioC 2.14 (R-3.1) (2 years)
License GPL (>= 3)
Depends R (>= 2.10), methods
Imports locfit, limma
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SystemRequirements
Enhances
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Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ABSSeq_1.8.0.tar.gz
Windows Binary ABSSeq_1.8.0.zip
Mac OS X 10.9 (Mavericks) ABSSeq_1.8.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ABSSeq/tree/release-3.3
Package Short Url http://bioconductor.org/packages/ABSSeq/
Package Downloads Report Download Stats

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