To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("AffyCompatible")

In most cases, you don't need to download the package archive at all.

AffyCompatible

Affymetrix GeneChip software compatibility

Bioconductor version: Release (2.14)

This package provides an interface to Affymetrix chip annotation and sample attribute files. The package allows an easy way for users to download and manage local data bases of Affynmetrix NetAffx annotation files. The package also provides access to GeneChip Operating System (GCOS) and GeneChip Command Console (AGCC)-compatible sample annotation files.

Author: Martin Morgan, Robert Gentleman

Maintainer: Martin Morgan <mtmorgan at fhcrc.org>

Citation (from within R, enter citation("AffyCompatible")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("AffyCompatible")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AffyCompatible")

 

PDF R Script Annotation retrieval with NetAffxResource
PDF R Script Retrieving MAGE and ARR sample attributes
PDF   Reference Manual

Details

biocViews Infrastructure, Microarray, OneChannel, Software
Version 1.24.1
In Bioconductor since BioC 2.2 (R-2.7)
License Artistic-2.0
Depends R (>= 2.7.0), XML (>= 2.8-1), RCurl (>= 0.8-1), methods
Imports Biostrings
Suggests
System Requirements
URL
Depends On Me
Imports Me IdMappingRetrieval
Suggests Me oneChannelGUI

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source AffyCompatible_1.24.1.tar.gz
Windows Binary AffyCompatible_1.24.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) AffyCompatible_1.24.1.tgz
Mac OS X 10.9 (Mavericks) AffyCompatible_1.24.1.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center