To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("AffyExpress")

In most cases, you don't need to download the package archive at all.

AffyExpress

Affymetrix Quality Assessment and Analysis Tool

Bioconductor version: Release (3.0)

The purpose of this package is to provide a comprehensive and easy-to-use tool for quality assessment and to identify differentially expressed genes in the Affymetrix gene expression data.

Author: Xiwei Wu <xwu at coh.org>, Xuejun Arthur Li <xueli at coh.org>

Maintainer: Xuejun Arthur Li <xueli at coh.org>

Citation (from within R, enter citation("AffyExpress")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("AffyExpress")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AffyExpress")

 

PDF R Script 1. Primer
PDF   Reference Manual

Details

biocViews Annotation, DifferentialExpression, Microarray, OneChannel, Preprocessing, QualityControl, ReportWriting, Software, Visualization
Version 1.32.0
In Bioconductor since BioC 2.1 (R-2.6)
License LGPL
Depends R (>= 2.10), affy(>= 1.23.4), limma
Imports
Suggests simpleaffy, R2HTML, affyPLM, hgu95av2cdf, hgu95av2, test3cdf, genefilter, estrogen, annaffy, gcrma
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source AffyExpress_1.32.0.tar.gz
Windows Binary AffyExpress_1.32.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) AffyExpress_1.32.0.tgz
Mac OS X 10.9 (Mavericks) AffyExpress_1.32.0.tgz
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