To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("AllelicImbalance")

In most cases, you don't need to download the package archive at all.

AllelicImbalance

Investigates allele specific expression

Bioconductor version: Release (3.0)

Provides a framework for allelic specific expression investigation using RNA-seq data

Author: Jesper R Gadin, Lasse Folkersen

Maintainer: Jesper R Gadin <j.r.gadin at gmail.com>

Citation (from within R, enter citation("AllelicImbalance")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("AllelicImbalance")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AllelicImbalance")

 

PDF R Script AllelicImbalance
PDF   Reference Manual
Text   NEWS

Details

biocViews Genetics, Infrastructure, Sequencing, Software
Version 1.4.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends R (>= 3.1.0), grid, GenomicRanges, GenomicAlignments
Imports methods, BiocGenerics, AnnotationDbi, Biostrings, S4Vectors, IRanges, Rsamtools, GenomicFeatures, Gviz, lattice, GenomeInfoDb
Suggests testthat, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP.20120608
System Requirements
URL https://github.com/pappewaio/AllelicImbalance
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source AllelicImbalance_1.4.0.tar.gz
Windows Binary AllelicImbalance_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) AllelicImbalance_1.4.0.tgz
Mac OS X 10.9 (Mavericks) AllelicImbalance_1.4.0.tgz
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