AllelicImbalance

Investigates allele specific expression

Bioconductor version: Release (2.14)

Provides a framework for allelic specific expression investigation using RNA-seq data

Author: Jesper R Gadin, Lasse Folkersen

Maintainer: Jesper R Gadin <j.r.gadin at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("AllelicImbalance")

To cite this package in a publication, start R and enter:

    citation("AllelicImbalance")

Documentation

PDF R Script AllelicImbalance
PDF   Reference Manual
Text   NEWS

Details

biocViews AI, ASE, Allelic Imbalance, Genetics, Infrastructure, Sequencing, Software
Version 1.2.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends GenomicAlignments, GenomicRanges, R (>= 3.0.0)
Imports methods, BiocGenerics, IRanges, Biostrings, Rsamtools, GenomicFeatures, AnnotationDbi
Suggests RUnit, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP.20120608
System Requirements
URL https://github.com/pappewaio/AllelicImbalance
Depends On Me
Imports Me
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Package Downloads

Package Source AllelicImbalance_1.2.0.tar.gz
Windows Binary AllelicImbalance_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) AllelicImbalance_1.2.0.tgz
Mac OS X 10.9 (Mavericks)
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