To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Anaquin")

In most cases, you don't need to download the package archive at all.

Anaquin

 

Statistical analysis of sequins

Bioconductor version: Release (3.5)

The project is intended to support the use of sequins (synthetic sequencing spike-in controls) owned and made available by the Garvan Institute of Medical Research. The goal is to provide a standard open source library for quantitative analysis, modelling and visualization of spike-in controls.

Author: Ted Wong

Maintainer: Ted Wong <t.wong at garvan.org.au>

Citation (from within R, enter citation("Anaquin")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Anaquin")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Anaquin")

 

PDF R Script Anaquin - Vignette
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DifferentialExpression, GeneExpression, Preprocessing, RNASeq, Software
Version 1.2.0
In Bioconductor since BioC 3.4 (R-3.3) (1 year)
License BSD_3_clause + file LICENSE
Depends R (>= 3.3), ggplot2 (>= 2.2.0)
Imports ggplot2, ROCR, knitr, qvalue, locfit, methods, stats, utils, plyr, DESeq2
LinkingTo
Suggests RUnit, rmarkdown
SystemRequirements
Enhances
URL www.sequin.xyz
BugReports https://github.com/student-t/RAnaquin/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Anaquin_1.2.0.tar.gz
Windows Binary Anaquin_1.2.0.zip
Mac OS X 10.11 (El Capitan) Anaquin_1.2.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/Anaquin/tree/release-3.5
Package Short Url http://bioconductor.org/packages/Anaquin/
Package Downloads Report Download Stats

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