To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("AnnotationHub")

In most cases, you don't need to download the package archive at all.

AnnotationHub

 

Client to access AnnotationHub resources

Bioconductor version: Release (3.1)

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

Author: Martin Morgan [cre], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationHub")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("AnnotationHub")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnnotationHub")

 

HTML R Script AnnotationHub: Access the AnnotationHub Web Service
HTML R Script AnnotationHub: How to write recipes for new resources for the AnnotationHub
PDF   Reference Manual
Text   NEWS

Details

biocViews Software
Version 2.0.1
In Bioconductor since BioC 2.12 (R-3.0) (2 years)
License Artistic-2.0
Depends
Imports utils, methods, RSQLite, BiocInstaller, BiocGenerics, S4Vectors, interactiveDisplayBase, httr, AnnotationDbi
LinkingTo
Suggests GenomicRanges, VariantAnnotation, Rsamtools, rtracklayer, GenomeInfoDb, BiocStyle, knitr, AnnotationForge, rBiopaxParser, RUnit
SystemRequirements
Enhances
URL
Depends On Me RefNet
Imports Me pwOmics
Suggests Me GenomicRanges, Pbase
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source AnnotationHub_2.0.1.tar.gz
Windows Binary AnnotationHub_2.0.1.zip
Mac OS X 10.6 (Snow Leopard) AnnotationHub_2.0.1.tgz
Mac OS X 10.9 (Mavericks) AnnotationHub_2.0.1.tgz
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