ArrayExpress

Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Bioconductor version: Release (2.14)

Access the ArrayExpress Repository at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Author: Audrey Kauffmann, Ibrahim Emam

Maintainer: Ibrahim Emam <iemam at ebi.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ArrayExpress")

To cite this package in a publication, start R and enter:

    citation("ArrayExpress")

Documentation

PDF R Script ArrayExpress: Import and convert ArrayExpress data sets into R object
PDF   Reference Manual

Details

biocViews DataImport, Microarray, OneChannel, Software, TwoChannel
Version 1.24.0
In Bioconductor since BioC 2.3 (R-2.8)
License Artistic-2.0
Depends R (>= 2.9.0), Biobase(>= 2.4.0)
Imports XML, affy, limma
Suggests
System Requirements
URL
Depends On Me DrugVsDisease
Imports Me
Suggests Me gCMAPWeb, gCMAPWeb, Hiiragi2013

Package Downloads

Package Source ArrayExpress_1.24.0.tar.gz
Windows Binary ArrayExpress_1.24.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ArrayExpress_1.24.0.tgz
Mac OS X 10.9 (Mavericks)
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