BSgenome

Infrastructure for Biostrings-based genome data packages

Bioconductor version: Release (2.9)

Infrastructure shared by all the Biostrings-based genome data packages

Author: Herve Pages

Maintainer: H. Pages

To install this package, start R and enter:

    source("http:///biocLite.R")
    biocLite("BSgenome")

To cite this package in a publication, start R and enter:

    citation("BSgenome")

PDF	R Script	Efficient genome searching with Biostrings and the BSgenome data packages
PDF	R Script	How to forge a BSgenome data package
PDF		Reference Manual

biocViews	Genetics, Infrastructure, DataRepresentation, SequenceMatching, Annotation, SNP
Depends	R, methods, IRanges, GenomicRanges, Biostrings
Imports
Suggests	RUnit, BSgenome.Celegans.UCSC.ce2, BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP.20100427, hgu95av2probe, Biobase
System Requirements
License	Artistic-2.0
URL
Depends On Me	ChIPpeakAnno, MEDIPS, PICS, REDseq, chipseq, htSeqTools, r3Cseq, rGADEM
Imports Me	ChIPpeakAnno, MEDIPS, PICS, R453Plus1Toolbox, Repitools, VariantAnnotation, charm, chipseq, genoset, ggbio, girafe, rtracklayer
Suggests Me	Biostrings, GeneRegionScan, GenomicFeatures, GenomicRanges, MEDIPS, Repitools, biovizBase, oneChannelGUI
Version	1.22.0
Since	Bioconductor 1.9 (R-2.4)

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