To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BayesPeak")

In most cases, you don't need to download the package archive at all.

BayesPeak

Bayesian Analysis of ChIP-seq Data

Bioconductor version: Release (3.0)

This package is an implementation of the BayesPeak algorithm for peak-calling in ChIP-seq data.

Author: Christiana Spyrou, Jonathan Cairns, Rory Stark, Andy Lynch, Simon Tavar\\'{e},

Maintainer: Jonathan Cairns <jmc200 at cam.ac.uk>

Citation (from within R, enter citation("BayesPeak")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BayesPeak")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BayesPeak")

 

PDF R Script BayesPeak Vignette
PDF   Reference Manual

Details

biocViews ChIPSeq, Software
Version 1.18.0
In Bioconductor since BioC 2.6 (R-2.11)
License GPL (>= 2)
Depends R (>= 2.14), IRanges
Imports IRanges, graphics
Suggests BiocStyle, parallel
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BayesPeak_1.18.0.tar.gz
Windows Binary BayesPeak_1.18.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) BayesPeak_1.18.0.tgz
Mac OS X 10.9 (Mavericks) BayesPeak_1.18.0.tgz
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