To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BiGGR")

In most cases, you don't need to download the package archive at all.

BiGGR

Constraint based modeling in R using metabolic reconstruction databases.

Bioconductor version: Release (3.0)

This package provides an interface to simulate metabolic reconstruction from the BiGG database(http://bigg.ucsd.edu/) and other metabolic reconstruction databases. The package facilitates flux balance analysis (FBA) and the sampling of feasible flux distributions. Metabolic networks and estimated fluxes can be visualized with hypergraphs.

Author: Anand K. Gavai, Hannes Hettling

Maintainer: Anand K. Gavai <anand.gavai at bioinformatics.nl>, Hannes Hettling <hannes.hettling at naturalis.nl>

Citation (from within R, enter citation("BiGGR")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BiGGR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiGGR")

 

PDF R Script BiGGR
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Metabolomics, Network, Software, Visualization
Version 1.2.0
In Bioconductor since BioC 2.13 (R-3.0)
License file LICENSE
Depends R (>= 2.14.0), rsbml, hyperdraw, LIM
Imports hypergraph
Suggests
System Requirements
URL http://www.bioconductor.org/
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BiGGR_1.2.0.tar.gz
Windows Binary BiGGR_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) BiGGR_1.2.0.tgz
Mac OS X 10.9 (Mavericks) BiGGR_1.2.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center