To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BioMedR")

In most cases, you don't need to download the package archive at all.

BioMedR

DOI: 10.18129/B9.bioc.BioMedR    

Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions

Bioconductor version: Release (3.5)

The BioMedR package offers an R/Bioconductor package generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.

Author: Min-feng Zhu <wind2zhu at 163.com>, Jie Dong <biomed at csu.edu.cn>, Dong-sheng Cao <oriental-cds at 163.com>

Maintainer: Min-feng Zhu <wind2zhu at 163.com>

Citation (from within R, enter citation("BioMedR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BioMedR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioMedR")

 

PDF R Script BioMedR: R/Bioconductor Package for generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews BiomedicalInformatics, Cheminformatics, DataImport, DataRepresentation, FeatureExtraction, GO, GraphAndNetwork, Proteomics, Software, SystemsBiology
Version 1.0.0
In Bioconductor since BioC 3.5 (R-3.4) (< 6 months)
License Artistic-2.0
Depends
Imports RCurl, rjson, rcdk (>= 3.3.2), foreach, doParallel, Biostrings, GOSemSim, ChemmineR, fmcsR, pls, randomForest, utils, stats, graphics, methods, org.Hs.eg.db, ChemmineOB
LinkingTo
Suggests RUnit, BiocGenerics
SystemRequirements Java JDK 1.8 or higher
Enhances
URL https://github.com/wind22zhu/BioMedR
BugReports https://github.com/wind22zhu/BioMedR/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BioMedR_1.0.0.tar.gz
Windows Binary BioMedR_1.0.0.zip
Mac OS X 10.11 (El Capitan) BioMedR_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BioMedR
Package Short Url http://bioconductor.org/packages/BioMedR/
Package Downloads Report Download Stats

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