Functions that are needed by many other packages or which
replace R functions.
Author: R. Gentleman, V. Carey, M. Morgan, S. Falcon
| biocViews |
Infrastructure, Bioinformatics |
| Depends |
R, utils |
| Imports |
methods |
| Suggests |
tools, tkWidgets, ALL |
| System Requirements |
|
| License |
Artistic-2.0 |
| URL |
|
| Depends On Me |
ACME, AGDEX, Agi4x44PreProcess, AgiMicroRna, AnnotationDbi, ArrayExpress, ArrayTools, BicARE, BioMVCClass, BioNet, BiocCaseStudies, CGHbase, CGHcall, CGHregions, CMA, Category, DESeq, DEXSeq, DFP, EBarrays, EDASeq, ExiMiR, GEOquery, GGBase, GGtools, GOFunction, GOstats, GSEABase, GSEAlm, GWASTools, GeneAnswers, GeneExpressionSignature, GeneMeta, GeneRegionScan, GeneSelectMMD, GeneSelector, HELP, HTqPCR, LMGene, LVSmiRNA, MLInterfaces, MSnbase, MergeMaid, Mfuzz, MiChip, MmPalateMiRNA, Mulcom, NormqPCR, OTUbase, OrderedList, OutlierD, PAnnBuilder, PGSEA, PLPE, PREDA, PROMISE, R453Plus1Toolbox, RMAGEML, RNAinteract, RTCA, RTools4TB, RTopper, RbcBook1, ReadqPCR, RefPlus, Resourcerer, Ringo, Rmagpie, RpsiXML, Rtreemix, SNPchip, SpeCond, TDARACNE, XDE, a4Base, a4Core, affyContam, affyPLM, affyQCReport, affy, affycomp, affycoretools, affylmGUI, altcdfenvs, annaffy, arrayMvout, beadarraySNP, beadarray, bgx, bioDist, cellHTS2, cellHTS, charm, clippda, clusterStab, cn.farms, cn.mops, codelink, convert, copa, crlmm, ddCt, dualKS, dyebias, edd, eisa, factDesign, flowClust, flowCore, flowWorkspace, frma, gaga, geneRecommender, geneplotter, genoset, goProfiles, hopach, htSeqTools, idiogram, inSilicoDb, isobar, iterativeBMA, lumi, maDB, maSigPro, macat, methylumi, minfi, multtest, nucleR, oligoClasses, oneChannelGUI, ontoTools, panp, pcaMethods, pcot2, pdInfoBuilder, pdmclass, phenoTest, plgem, prada, puma, qpcrNorm, rHVDM, rMAT, rbsurv, reb, rnaSeqMap, rqubic, safe, siggenes, simpleaffy, spkTools, splicegear, tigre, tilingArray, topGO, tspair, twilight, vsn, webbioc |
| Imports Me |
ABarray, AgiMicroRna, AnnotationDbi, ArrayExpressHTS, ArrayTools, BioSeqClass, CGHnormaliter, Category, ChromHeatMap, ConsensusClusterPlus, EBarrays, ExiMiR, GEOsubmission, GOFunction, GOstats, GSEABase, GSRI, GSVA, GeneMeta, GeneRegionScan, GeneSelectMMD, GenomicFeatures, HEM, HTqPCR, Harshlight, LiquidAssociation, MCRestimate, MiChip, MiPP, MmPalateMiRNA, OrderedList, PAnnBuilder, PCpheno, PROMISE, R453Plus1Toolbox, ReadqPCR, Rmagpie, Rtreemix, SAGx, SLGI, SNPchip, ShortRead, TEQC, TSSi, VanillaICE, VariantAnnotation, XDE, aCGH, adSplit, affyILM, affyQCReport, affy, annotate, annotationTools, arrayQualityMetrics, attract, betr, biocViews, charm, cycle, ecolitk, farms, flowCore, flowFP, flowFlowJo, flowMeans, flowStats, flowType, flowUtils, flowViz, flowWorkspace, frmaTools, frma, gcrma, geneRecommender, genefilter, geneplotter, genomeIntervals, genoset, girafe, globaltest, hopach, iFlow, imageHTS, lapmix, lumi, mBPCR, maSigPro, maanova, makecdfenv, metaArray, methylumi, multiscan, mzR, ncdfFlow, nucleR, oligo, panp, plateCore, plier, ppiStats, prada, puma, pvac, qpgraph, rMAT, randPack, rqubic, safe, simpleaffy, spkTools, splicegear, tigre, timecourse, topGO, twilight, webbioc, xmapcore |
| Suggests Me |
BSgenome, BiocCaseStudies, Category, GlobalAncova, Heatplus, ROC, annotate, betr, biocViews, farms, genefilter, geneplotter, globaltest, les, nem, pkgDepTools, survcomp, tkWidgets, vbmp, widgetTools |
| Version |
2.14.0 |
| Since |
Bioconductor 1.6 (R-2.1) or earlier |
