To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CGHcall")

In most cases, you don't need to download the package archive at all.

CGHcall

Calling aberrations for array CGH tumor profiles.

Bioconductor version: Release (3.0)

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Author: Mark van de Wiel, Sjoerd Vosse

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

Citation (from within R, enter citation("CGHcall")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CGHcall")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CGHcall")

 

PDF R Script CGHcall
PDF   Reference Manual

Details

biocViews Microarray, Preprocessing, Software, Visualization
Version 2.28.0
In Bioconductor since BioC 2.1 (R-2.6)
License GPL (http://www.gnu.org/copyleft/gpl.html)
Depends R (>= 2.0.0), impute(>= 1.8.0), DNAcopy(>= 1.6.0), methods, Biobase, CGHbase(>= 1.15.1), snowfall
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me CGHnormaliter, focalCall
Imports Me CGHnormaliter, QDNAseq
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CGHcall_2.28.0.tar.gz
Windows Binary CGHcall_2.28.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CGHcall_2.28.0.tgz
Mac OS X 10.9 (Mavericks) CGHcall_2.28.0.tgz
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