CGHcall

Calling aberrations for array CGH tumor profiles.

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Author	Sjoerd Vosse and Mark van de Wiel
Maintainer	Mark van de Wiel

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("CGHcall")

Documentation

CGHcall	PDF	R Script
Reference Manual

Details

biocViews	Microarray , DNACopyNumber , Preprocessing , Visualization
Depends	R , impute , DNAcopy , methods , Biobase , CGHbase
Imports
Suggests
System Requirements
License	GPL
URL
Depends On Me	CGHnormaliter
Imports Me	CGHnormaliter
Suggests Me

Package Downloads

Package source	CGHcall_2.8.0.tar.gz
Windows 32-bit binary	CGHcall_2.8.0.zip
Windows 64-bit binary	CGHcall_2.8.0.zip
MacOS X 10.5 (Leopard) binary	CGHcall_2.8.0.tgz
Package Downloads Report	Downloads Stats