To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CGHcall")

In most cases, you don't need to download the package archive at all.

CGHcall

Calling aberrations for array CGH tumor profiles.

Bioconductor version: Release (3.0)

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Author: Mark van de Wiel, Sjoerd Vosse

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

Citation (from within R, enter citation("CGHcall")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CGHcall")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CGHcall")

 

PDF R Script CGHcall
PDF   Reference Manual

Details

biocViews Microarray, Preprocessing, Software, Visualization
Version 2.28.0
In Bioconductor since BioC 2.1 (R-2.6)
License GPL (http://www.gnu.org/copyleft/gpl.html)
Depends R (>= 2.0.0), impute(>= 1.8.0), DNAcopy(>= 1.6.0), methods, Biobase, CGHbase(>= 1.15.1), snowfall
Imports
Suggests
System Requirements
URL
Depends On Me CGHnormaliter, focalCall
Imports Me CGHnormaliter, QDNAseq
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CGHcall_2.28.0.tar.gz
Windows Binary CGHcall_2.28.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CGHcall_2.28.0.tgz
Mac OS X 10.9 (Mavericks) CGHcall_2.28.0.tgz
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