COPDSexualDimorphism

Sexual dimorphic and COPD differential analysis for gene expression and methylation.

Bioconductor version: Release (2.14)

Sexual dimoprhic and COPD differential (SDCD) analysis contrasts regression coefficients from two stratified analysis. Stratification can be done in two ways: by COPD status or by sex. For COPD-stratified analysis, SDCD analysis contrasts sexual dimorphism between cases and controls, while sex-stratified SDCD analsysis contrasts COPD differential expression pattern between males and females. The package is meant to be used in conjunction with the package limma.

Author: J Fah Sathirapongsasuti

Maintainer: J Fah Sathirapongsasuti <fah at cs.stanford.edu>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("COPDSexualDimorphism")

Citation (from within R, enter citation("COPDSexualDimorphism")):

Documentation

PDF R Script SDCD eQTL
PDF R Script SDCD Genes
PDF R Script SDCD Methylation
PDF   Reference Manual
Text   NEWS

Details

biocViews AssayDomain, DNAMethylation, DifferentialExpression, GeneExpression, Microarray, Software
Version 1.0.0
In Bioconductor since BioC 2.14 (R-3.1)
License LGPL-2.1
Depends COPDSexualDimorphism.data, NCBI2R, RColorBrewer, beeswarm, limma, GenomicRanges, gplots, gtools
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Package Downloads

Package Source COPDSexualDimorphism_1.0.0.tar.gz
Windows Binary COPDSexualDimorphism_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) COPDSexualDimorphism_1.0.0.tgz
Mac OS X 10.9 (Mavericks) COPDSexualDimorphism_1.0.0.tgz
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