To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChIPexoQual")

In most cases, you don't need to download the package archive at all.

ChIPexoQual

 

ChIPexoQual

Bioconductor version: Release (3.5)

Package with a quality control pipeline for ChIP-exo/nexus data.

Author: Rene Welch, Dongjun Chung, Sunduz Keles

Maintainer: Rene Welch <welch at stat.wisc.edu>

Citation (from within R, enter citation("ChIPexoQual")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChIPexoQual")

Documentation

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Details

biocViews ChIPSeq, QualityControl, Sequencing, Software, Transcription, Visualization
Version 1.0.0
In Bioconductor since BioC 3.5 (R-3.4) (< 6 months)
License GPL (>=2)
Depends R (>= 3.3.0), GenomicAlignments(>= 1.0.1)
Imports methods, GenomeInfoDb, stats, BiocParallel, GenomicRanges(>= 1.14.4), ggplot2 (>= 1.0), data.table (>= 1.9.6), Rsamtools(>= 1.16.1), IRanges(>= 1.6), S4Vectors(>= 0.8), biovizBase(>= 1.18), broom (>= 0.4), RColorBrewer (>= 1.1), dplyr (>= 0.5), scales (>= 0.4.0), viridis (>= 0.3), hexbin (>= 1.27), rmarkdown
LinkingTo
Suggests ChIPexoQualExample(>= 0.99.1), knitr (>= 1.10), BiocStyle, gridExtra (>= 2.2), testthat
SystemRequirements
Enhances
URL https:github.com/keleslab/ChIPexoQual
BugReports https://github.com/welch16/ChIPexoQual/issues
Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ChIPexoQual_1.0.0.tar.gz
Windows Binary ChIPexoQual_1.0.0.zip
Mac OS X 10.11 (El Capitan) ChIPexoQual_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ChIPexoQual
Package Short Url http://bioconductor.org/packages/ChIPexoQual/
Package Downloads Report Download Stats

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