To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CopyNumber450k")

In most cases, you don't need to download the package archive at all.

CopyNumber450k

R package for calling CNV from Illumina 450k methylation microarrays

Bioconductor version: Release (3.0)

This package contains a set of functions that allow CNV calling from Illumina 450k methylation microarrays.

Author: Simon Papillon-Cavanagh, Jean-Philippe Fortin, Nicolas De Jay

Maintainer: Simon Papillon-Cavanagh <simon.papillon-cavanagh at mail.mcgill.ca>

Citation (from within R, enter citation("CopyNumber450k")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CopyNumber450k")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CopyNumber450k")

 

PDF R Script CopyNumber450k User's Guide
PDF   Reference Manual

Details

biocViews CopyNumberVariation, DNAMethylation, Microarray, Preprocessing, QualityControl, Software
Version 1.2.0
In Bioconductor since BioC 2.14 (R-3.1)
License Artistic-2.0
Depends Biobase, minfi, DNAcopy, preprocessCore, BiocGenerics
Imports methods
Suggests CopyNumber450kData, minfiData
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CopyNumber450k_1.2.0.tar.gz
Windows Binary CopyNumber450k_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CopyNumber450k_1.2.0.tgz
Mac OS X 10.9 (Mavericks) CopyNumber450k_1.2.0.tgz
Browse/checkout source (username/password: readonly)
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