To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DEFormats")

In most cases, you don't need to download the package archive at all.

DEFormats

 

   

Differential gene expression data formats converter

Bioconductor version: Release (3.5)

Covert between different data formats used by differential gene expression analysis tools.

Author: Andrzej Oleś

Maintainer: Andrzej Oleś <andrzej.oles at embl.de>

Citation (from within R, enter citation("DEFormats")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DEFormats")

Documentation

HTML R Script Differential gene expression data formats converter
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, RNASeq, Sequencing, Software, Transcription
Version 1.4.0
In Bioconductor since BioC 3.3 (R-3.3) (1 year)
License GPL-3
Depends
Imports checkmate, DESeq2, edgeR(>= 3.13.4), GenomicRanges, methods, stats, SummarizedExperiment
LinkingTo
Suggests BiocStyle(>= 1.8.0), knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL https://github.com/aoles/DEFormats
BugReports https://github.com/aoles/DEFormats/issues
Depends On Me
Imports Me regionReport
Suggests Me ideal
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DEFormats_1.4.0.tar.gz
Windows Binary DEFormats_1.4.0.zip
Mac OS X 10.11 (El Capitan) DEFormats_1.4.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/DEFormats/tree/release-3.5
Package Short Url http://bioconductor.org/packages/DEFormats/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: