DOSE

Disease Ontology Semantic and Enrichment analysis

Bioconductor version: Release (2.14)

Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for measuring DO semantic similarities, and hypergeometric test for enrichment analysis.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("DOSE")

To cite this package in a publication, start R and enter:

    citation("DOSE")

Documentation

PDF R Script DOSE - an R package for Disease Ontology Semantic and Enrichment
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Software
Version 2.2.0
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends R (>= 2.10), ggplot2
Imports methods, plyr, qvalue, stats4, AnnotationDbi, DO.db, org.Hs.eg.db, igraph, scales, reshape2, graphics, GOSemSim, grid
Suggests clusterProfiler, ReactomePA, knitr
System Requirements
URL
Depends On Me
Imports Me clusterProfiler, ReactomePA
Suggests Me ChIPseeker, GOSemSim

Package Downloads

Package Source DOSE_2.2.0.tar.gz
Windows Binary DOSE_2.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) DOSE_2.2.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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