To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DOSE")

In most cases, you don't need to download the package archive at all.

DOSE

Disease Ontology Semantic and Enrichment analysis

Bioconductor version: Release (2.14)

Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for measuring DO semantic similarities, and hypergeometric test for enrichment analysis.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("DOSE")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DOSE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DOSE")

 

PDF R Script DOSE - an R package for Disease Ontology Semantic and Enrichment
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Software
Version 2.2.1
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends R (>= 2.10), ggplot2
Imports methods, plyr, qvalue, stats4, AnnotationDbi, DO.db, igraph, scales, reshape2, graphics, GOSemSim, grid
Suggests clusterProfiler, ReactomePA, knitr, org.Hs.eg.db
System Requirements
URL
Depends On Me
Imports Me clusterProfiler, ReactomePA
Suggests Me ChIPseeker, GOSemSim

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DOSE_2.2.1.tar.gz
Windows Binary DOSE_2.2.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) DOSE_2.2.1.tgz
Mac OS X 10.9 (Mavericks) DOSE_2.2.1.tgz
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