ExpressionView

Visualize biclusters identified in gene expression data

ExpressionView visualizes possibly overlapping biclusters in a gene expression matrix. It can use the result of the ISA method (eisa package) or the algorithms in the biclust package or others. The viewer itself was developed using Adobe Flex and runs in a flash-enabled web browser.

Author	Andreas Luscher
Maintainer	Gabor Csardi

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ExpressionView")

Documentation

ExpressionView	PDF	R Script
ExpressionView file format	PDF	R Script
How the ordering algorithm works	PDF	R Script
Reference Manual

Details

biocViews	Classification , Visualization , Microarray , GeneExpression
Depends	caTools , bitops
Imports	methods , isa2 , eisa , GO.db , KEGG.db , AnnotationDbi
Suggests	ALL , hgu95av2.db , biclust , GO.db , KEGG.db , AnnotationDbi , affy
System Requirements
License	GPL (>= 2)
URL
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Package Downloads

Package source	ExpressionView_1.1.0.tar.gz
Windows 32-bit binary	ExpressionView_1.1.0.zip
Windows 64-bit binary	ExpressionView_1.1.0.zip
MacOS X 10.5 (Leopard) binary	ExpressionView_1.1.0.tgz
Package Downloads Report	Downloads Stats