FELLA

DOI: 10.18129/B9.bioc.FELLA    

Interpretation and enrichment for metabolomics data

Bioconductor version: Release (3.7)

Enrichment of metabolomics data using KEGG entries. Given a set of affected compounds, FELLA suggests affected reactions, enzymes, modules and pathways using label propagation in a knowledge model network. The resulting subnetwork can be visualised and exported.

Author: Sergio Picart-Armada [aut, cre], Francesc Fernandez-Albert [aut], Alexandre Perera-Lluna [aut]

Maintainer: Sergio Picart-Armada <sergi.picart at upc.edu>

Citation (from within R, enter citation("FELLA")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("FELLA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FELLA")

 

PDF R Script FELLA
HTML R Script Quick start
PDF   Reference Manual
Text   NEWS

Details

biocViews GO, GraphAndNetwork, KEGG, Metabolomics, Network, NetworkEnrichment, Pathways, Software
Version 1.0.0
License GPL-3
Depends R (>= 3.5.0)
Imports methods, igraph, Matrix, KEGGREST, plyr, stats, graphics, utils
LinkingTo
Suggests shiny, visNetwork, knitr, BiocStyle, rmarkdown, testthat, biomaRt, org.Hs.eg.db, AnnotationDbi, GOSemSim
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package FELLA_1.0.0.tar.gz
Windows Binary FELLA_1.0.0.zip
Mac OS X 10.11 (El Capitan) FELLA_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/FELLA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/FELLA
Package Short Url http://bioconductor.org/packages/FELLA/
Package Downloads Report Download Stats

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