GEOquery

Get data from NCBI Gene Expression Omnibus (GEO)

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.

Author	Sean Davis
Maintainer	Sean Davis

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GEOquery")

Documentation

GEOquery	PDF	R Script
Reference Manual

Details

biocViews	Microarray , DataImport , OneChannel , TwoChannel , SAGE
Depends	methods , Biobase
Imports	XML , RCurl
Suggests	limma , RUnit
System Requirements
License	GPL-2
URL	http://watson.nci.nih.gov/~sdavis
Depends On Me	GEOmetadb
Imports Me	SRAdb
Suggests Me	PGSEA , dyebias

Package Downloads

Package source	GEOquery_2.13.5.tar.gz
Windows 32-bit binary	GEOquery_2.13.5.zip
Windows 64-bit binary	GEOquery_2.13.5.zip
MacOS X 10.5 (Leopard) binary	GEOquery_2.13.5.tgz
Package Downloads Report	Downloads Stats