To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GEOsearch")

In most cases, you don't need to download the package archive at all.

GEOsearch

DOI: 10.18129/B9.bioc.GEOsearch    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

GEOsearch

Bioconductor version: Release (3.5)

GEOsearch is an extendable search engine for NCBI GEO (Gene Expression Omnibus). Instead of directly searching the term, GEOsearch can find all the gene names contained in the search term and search all the alias of the gene names simultaneously in GEO database. GEOsearch also provides other functions such as summarizing common biology keywords in the search results.

Author: Zhicheng Ji, Hongkai Ji

Maintainer: Zhicheng Ji <zji4 at jhu.edu>

Citation (from within R, enter citation("GEOsearch")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GEOsearch")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GEOsearch")

 

PDF R Script GEOsearch: Extendable Search Engine for Gene Expression Omnibus
PDF   Reference Manual
Text   NEWS

Details

biocViews GUI, Software
Version 1.2.0
In Bioconductor since BioC 3.2 (R-3.2) (2 years)
License GPL(>=2)
Depends R (>= 3.2)
Imports RCurl, org.Hs.eg.db, org.Mm.eg.db
LinkingTo
Suggests knitr, shiny, DT, org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db, org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Ss.eg.db, org.Xl.eg.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GEOsearch_1.2.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) GEOsearch_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GEOsearch
Package Short Url http://bioconductor.org/packages/GEOsearch/
Package Downloads Report Download Stats

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