GGtools

software and data for genetics of gene expression (c) 2006 VJ Carey

Bioconductor version: Release (2.9)

dealing with hapmap SNP reports, GWAS, etc.

Author: Vince Carey

Maintainer: Vince Carey

To install this package, start R and enter:

    source("http:///biocLite.R")
    biocLite("GGtools")

To cite this package in a publication, start R and enter:

    citation("GGtools")

PDF	R Script	external -- decomposable smlSet representation
PDF	R Script	GGtools Bioinfo Application note support
PDF	R Script	GGtools: exploring genetics of gene expression
PDF		lab2010.pdf
PDF		Reference Manual
Text		README
Text		NEWS

biocViews	SNP, GeneticVariability, Genetics, Bioinformatics
Depends	R, methods, Biobase, GGBase, snpStats, annotate, IRanges, rtracklayer, org.Hs.eg.db, GenomicRanges, ff
Imports	AnnotationDbi, IRanges, annaffy, rtracklayer, bit, Rsamtools
Suggests	illuminaHumanv1.db, org.Hs.eg.db, SNPlocs.Hsapiens.dbSNP.20100427, rpart, rtracklayer, ceu1kg, SNPlocs.Hsapiens.dbSNP.20090506, chopsticks, GGdata, genefilter
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	4.0.0
Since	Bioconductor 1.9 (R-2.4)

Common Bioconductor workflows include:

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