To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GGtools")

In most cases, you don't need to download the package archive at all.

GGtools

software and data for analyses in genetics of gene expression

Bioconductor version: Release (3.0)

software and data for analyses in genetics of gene expression and/or DNA methylation

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("GGtools")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GGtools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GGtools")

 

PDF R Script GGtools: software for eQTL identification
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews GeneExpression, GeneticVariability, Genetics, SNP, Software
Version 5.2.0
In Bioconductor since BioC 1.9 (R-2.4)
License Artistic-2.0
Depends R (>= 2.14), GGBase(>= 3.19.7), data.table, parallel
Imports methods, utils, stats, BiocGenerics, snpStats, ff, Rsamtools, AnnotationDbi, Biobase, bit, VariantAnnotation, hexbin, rtracklayer, Gviz, stats4, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, iterators, Biostrings, ROCR, biglm, ggplot2, reshape2
Suggests GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP.20120608, multtest, aod, rmeta
System Requirements
URL
Depends On Me ceu1kg, cgdv17, cheung2010, encoDnaseI, ggtut
Imports Me ceuhm3
Suggests Me GGBase, hmyriB36, ind1KG

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GGtools_5.2.0.tar.gz
Windows Binary GGtools_5.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GGtools_5.2.0.tgz
Mac OS X 10.9 (Mavericks) GGtools_5.2.0.tgz
Browse/checkout source (username/password: readonly)
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