GOsummaries

DOI: 10.18129/B9.bioc.GOsummaries    

Word cloud summaries of GO enrichment analysis

Bioconductor version: Release (3.7)

A package to visualise Gene Ontology (GO) enrichment analysis results on gene lists arising from different analyses such clustering or PCA. The significant GO categories are visualised as word clouds that can be combined with different plots summarising the underlying data.

Author: Raivo Kolde <raivo.kolde at eesti.ee>

Maintainer: Raivo Kolde <raivo.kolde at eesti.ee>

Citation (from within R, enter citation("GOsummaries")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOsummaries")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOsummaries")

 

PDF R Script GOsummaries basics
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, GO, GeneExpression, Software, Visualization
Version 2.16.1
In Bioconductor since BioC 3.0 (R-3.1) (4 years)
License GPL (>= 2)
Depends R (>= 2.15), Rcpp
Imports plyr, grid, gProfileR, reshape2, limma, ggplot2, gtable
LinkingTo Rcpp
Suggests vegan
SystemRequirements
Enhances
URL https://github.com/raivokolde/GOsummaries
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GOsummaries_2.16.1.tar.gz
Windows Binary GOsummaries_2.16.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) GOsummaries_2.16.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/GOsummaries
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GOsummaries
Package Short Url http://bioconductor.org/packages/GOsummaries/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

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