To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("JunctionSeq")

In most cases, you don't need to download the package archive at all.

JunctionSeq

 

JunctionSeq: A Utility for Detection of Differential Exon and Splice-Junction Usage in RNA-Seq data

Bioconductor version: Release (3.5)

A Utility for Detection and Visualization of Differential Exon or Splice-Junction Usage in RNA-Seq data.

Author: Stephen Hartley [aut, cre] (PhD), Simon Anders [cph], Alejandro Reyes [cph]

Maintainer: Stephen Hartley <JunctionSeq-contact at list.nih.gov>

Citation (from within R, enter citation("JunctionSeq")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("JunctionSeq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("JunctionSeq")

 

PDF JunctionSeq Vignette
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DifferentialExpression, RNASeq, Sequencing, Software
Version 1.6.0
In Bioconductor since BioC 3.3 (R-3.3) (1.5 years)
License file LICENSE
Depends R (>= 3.4.0), methods, SummarizedExperiment(>= 0.2.0)
Imports DESeq2(>= 1.10.0), statmod, Hmisc, plotrix, stringr, Biobase(>= 2.30.0), locfit, BiocGenerics(>= 0.7.5), BiocParallel, genefilter, geneplotter, S4Vectors, IRanges, GenomicRanges
LinkingTo
Suggests MASS, knitr, JctSeqData, BiocStyle
SystemRequirements
Enhances Cairo, pryr
URL http://hartleys.github.io/JunctionSeq/index.html
BugReports https://github.com/hartleys/JunctionSeq/issues
Depends On Me
Imports Me
Suggests Me JctSeqData
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source JunctionSeq_1.6.0.tar.gz
Windows Binary JunctionSeq_1.6.0.zip
Mac OS X 10.11 (El Capitan) JunctionSeq_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/JunctionSeq
Package Short Url http://bioconductor.org/packages/JunctionSeq/
Package Downloads Report Download Stats

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