To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MSstats")

In most cases, you don't need to download the package archive at all.

MSstats

 

Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments

Bioconductor version: Release (3.1)

A set of tools for statistical relative protein significance analysis in DDA, SRM and DIA experiments.

Author: Meena Choi <choi67 at purdue.edu>, Ching-Yun Chang <chang54 at purdue.edu>, Olga Vitek <ovitek at purdue.edu>

Maintainer: Meena Choi <choi67 at purdue.edu>

Citation (from within R, enter citation("MSstats")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MSstats")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSstats")

 

PDF R Script Protein quantification in LC-MS, SRM, DIA experiments
PDF   Reference Manual
Text   NEWS

Details

biocViews MassSpectrometry, Proteomics, Software
Version 2.6.0
In Bioconductor since BioC 2.13 (R-3.0) (1.5 years)
License Artistic-2.0
Depends R (>= 3.0), Rcpp, MSnbase, reshape
Imports lme4, marray, limma, gplots, ggplot2, preprocessCore
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Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MSstats_2.6.0.tar.gz
Windows Binary MSstats_2.6.0.zip
Mac OS X 10.6 (Snow Leopard) MSstats_2.6.0.tgz
Mac OS X 10.9 (Mavericks) MSstats_2.6.0.tgz
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