MTseeker

DOI: 10.18129/B9.bioc.MTseeker    

Bioconductor Tools for Human Mitochondrial Variant Analysis

Bioconductor version: Release (3.8)

Variant analysis tools for mitochondrial genetics.

Author: Tim Triche [cre, aut], Noor Sohail [aut], Ben Johnson [aut], Tim Vickers [ctb], Azif Zubair [ctb]

Maintainer: Tim Triche <tim.triche at gmail.com>

Citation (from within R, enter citation("MTseeker")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("MTseeker", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MTseeker")

 

HTML R Script MTseeker example
PDF   Reference Manual

Details

biocViews Genetics, Metabolomics, Software, VariantAnnotation
Version 1.0.6
License GPL-3
Depends viridis, S4Vectors, GenomeInfoDb, GenomicAlignments, VariantAnnotation
Imports xml2, utils, gmapR, methods, IRanges, Biobase, circlize, jsonlite, graphics, Rsamtools, grDevices, Biostrings, rtracklayer, VariantTools, Homo.sapiens, BiocGenerics, GenomicRanges, GenomicFeatures, SummarizedExperiment
LinkingTo
Suggests MTseekerData, BiocStyle, rmarkdown, ggthemes, ggplot2, pkgdown, knitr, rsvg
SystemRequirements
Enhances
URL
Depends On Me
Imports Me MTseekerData
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MTseeker_1.0.6.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) MTseeker_1.0.6.tgz
Source Repository git clone https://git.bioconductor.org/packages/MTseeker
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MTseeker
Package Short Url http://bioconductor.org/packages/MTseeker/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.8 Source Archive

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