MiRaGE

MiRNA Ranking by Gene Expression

Bioconductor version: Release (2.14)

The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.

Author: Y-h. Taguchi <tag at granular.com>

Maintainer: Y-h. Taguchi <tag at granular.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("MiRaGE")

To cite this package in a publication, start R and enter:

    citation("MiRaGE")

Documentation

PDF R Script How to use MiRaGE Package
PDF   Reference Manual

Details

biocViews GeneExpression, Microarray, RNASeq, RNAseqData, SAGE, Sequencing, Software
Version 1.6.0
In Bioconductor since BioC 2.11 (R-2.15)
License GPL
Depends R (>= 3.1.0), Biobase(>= 2.23.3)
Imports AnnotationDbi, BiocGenerics
Suggests seqinr (>= 3.0.7), biomaRt(>= 2.19.1), GenomicFeatures(>= 1.15.4), Biostrings(>= 2.31.3), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10, miRNATarget, humanStemCell, IRanges, GenomicRanges(>= 1.8.3), BSgenome, beadarrayExampleData
System Requirements
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Package Downloads

Package Source MiRaGE_1.6.0.tar.gz
Windows Binary MiRaGE_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) MiRaGE_1.6.0.tgz
Mac OS X 10.9 (Mavericks)
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