To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MinimumDistance")

In most cases, you don't need to download the package archive at all.

MinimumDistance

 

A package for de novo CNV detection in case-parent trios

Bioconductor version: Release (3.2)

Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms

Author: Robert B Scharpf and Ingo Ruczinski

Maintainer: Robert B Scharpf <rscharpf at jhu.edu>

Citation (from within R, enter citation("MinimumDistance")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MinimumDistance")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MinimumDistance")

 

PDF Detection of de novo copy number alterations in case-parent trios
PDF   Reference Manual
Text   NEWS

Details

biocViews CopyNumberVariation, Microarray, SNP, Software
Version 1.14.0
In Bioconductor since BioC 2.10 (R-2.15) (4 years)
License Artistic-2.0
Depends R (>= 3.01), VanillaICE(>= 1.31.3)
Imports methods, oligoClasses, S4Vectors, Biobase, DNAcopy, BiocGenerics, ff, foreach, matrixStats, IRanges, lattice, GenomicRanges(>= 1.17.16), SummarizedExperiment(>= 0.2.0), GenomeInfoDb, data.table, grid, stats
LinkingTo
Suggests human610quadv1bCrlmm(>= 1.0.3), BSgenome.Hsapiens.UCSC.hg18, BSgenome.Hsapiens.UCSC.hg19, SNPchip, RUnit
SystemRequirements
Enhances snow, doSNOW
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MinimumDistance_1.14.0.tar.gz
Windows Binary MinimumDistance_1.14.0.zip
Mac OS X 10.6 (Snow Leopard) MinimumDistance_1.14.0.tgz
Mac OS X 10.9 (Mavericks) MinimumDistance_1.14.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/MinimumDistance/tree/release-3.2
Package Short Url http://bioconductor.org/packages/MinimumDistance/
Package Downloads Report Download Stats

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