To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MinimumDistance")

In most cases, you don't need to download the package archive at all.

MinimumDistance

This is the development version of MinimumDistance; for the stable release version, see MinimumDistance.

A package for de novo CNV detection in case-parent trios

Bioconductor version: Development (3.0)

Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms

Author: Robert B Scharpf and Ingo Ruczinski

Maintainer: Robert B Scharpf <rscharpf at jhu.edu>

Citation (from within R, enter citation("MinimumDistance")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MinimumDistance")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MinimumDistance")

 

PDF R Script Detection of de novo copy number alterations in case-parent trios
PDF   Reference Manual
Text   NEWS

Details

biocViews CopyNumberVariation, Microarray, SNP, Software
Version 1.9.19
In Bioconductor since BioC 2.10 (R-2.15)
License Artistic-2.0
Depends R (>= 3.01)
Imports oligoClasses, S4Vectors, VanillaICE(>= 1.27.29), Biobase, DNAcopy, BiocGenerics, ff, foreach, matrixStats, IRanges, lattice, GenomicRanges(>= 1.17.16), GenomeInfoDb, data.table
Suggests human610quadv1bCrlmm(>= 1.0.3), SNPchip, RUnit
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MinimumDistance_1.9.19.tar.gz
Windows Binary MinimumDistance_1.9.19.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) MinimumDistance_1.9.19.tgz
Mac OS X 10.9 (Mavericks) MinimumDistance_1.9.19.tgz
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