MotIV

Motif Identification and Validation

Bioconductor version: Release (2.14)

This package makes use of STAMP for comparing a set of motifs to a given database (e.g. JASPAR). It can also be used to visualize motifs, motif distributions, modules and filter motifs.

Author: Eloi Mercier, Raphael Gottardo

Maintainer: Eloi Mercier <emercier at bcgsc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("MotIV")

To cite this package in a publication, start R and enter:

    citation("MotIV")

Documentation

PDF R Script The MotIV users guide
PDF   Reference Manual

Details

biocViews ChIPSeq, ChIPchip, GenomicSequence, Microarray, MotifAnnotation, Software
Version 1.20.0
In Bioconductor since BioC 2.6 (R-2.11)
License GPL-2
Depends R (>= 2.10), BiocGenerics(>= 0.1.0)
Imports graphics, grid, methods, IRanges(>= 1.13.5), Biostrings(>= 1.24.0), lattice, rGADEM, stats, utils
Suggests rtracklayer
System Requirements
URL
Depends On Me motifStack
Imports Me
Suggests Me MotifDb

Package Downloads

Package Source MotIV_1.20.0.tar.gz
Windows Binary MotIV_1.20.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) MotIV_1.20.0.tgz
Mac OS X 10.9 (Mavericks)
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