QuartPAC

DOI: 10.18129/B9.bioc.QuartPAC    

Identification of mutational clusters in protein quaternary structures.

Bioconductor version: Release (3.8)

Identifies clustering of somatic mutations in proteins over the entire quaternary structure.

Author: Gregory Ryslik, Yuwei Cheng, Hongyu Zhao

Maintainer: Gregory Ryslik <gregory.ryslik at yale.edu>

Citation (from within R, enter citation("QuartPAC")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("QuartPAC", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("QuartPAC")

 

PDF R Script SpacePAC: Identifying mutational clusters in 3D protein space using simulation
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, Proteomics, Software, SomaticMutation
Version 1.14.0
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License GPL-2
Depends iPAC, GraphPAC, SpacePAC, data.table
Imports
LinkingTo
Suggests RUnit, BiocGenerics, rgl
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package QuartPAC_1.14.0.tar.gz
Windows Binary QuartPAC_1.14.0.zip
Mac OS X 10.11 (El Capitan) QuartPAC_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/QuartPAC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/QuartPAC
Package Short Url http://bioconductor.org/packages/QuartPAC/
Package Downloads Report Download Stats

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