To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RCytoscape")

In most cases, you don't need to download the package archive at all.

RCytoscape

Display and manipulate graphs in Cytoscape

Bioconductor version: Release (2.14)

Interactvive viewing and exploration of graphs, connecting R to Cytoscape.

Author: Paul Shannon

Maintainer: Paul Shannon <pshannon at fhcrc.org>

Citation (from within R, enter citation("RCytoscape")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RCytoscape")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RCytoscape")

 

PDF R Script RCytoscape Overview
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version 1.14.0
In Bioconductor since BioC 2.7 (R-2.12)
License GPL-2
Depends R (>= 2.14.0), graph(>= 1.31.0), XMLRPC (>= 0.2.4)
Imports methods, XMLRPC, BiocGenerics
Suggests RUnit
System Requirements
URL http://rcytoscape.systemsbiology.net
Depends On Me
Imports Me categoryCompare, NCIgraph, RamiGO
Suggests Me clipper, GeneNetworkBuilder, graphite, mmnet, NetPathMiner

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RCytoscape_1.14.0.tar.gz
Windows Binary RCytoscape_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) RCytoscape_1.14.0.tgz
Mac OS X 10.9 (Mavericks) RCytoscape_1.14.0.tgz
Browse/checkout source (username/password: readonly)
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