Registration and Call for Abstracts Open for Bioc2024

RDRToolbox

A package for nonlinear dimension reduction with Isomap and LLE.


Bioconductor version: Release (3.18)

A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <c.bartenhagen at uni-koeln.de>

Citation (from within R, enter citation("RDRToolbox")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RDRToolbox")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RDRToolbox")
A package for nonlinear dimension reduction with Isomap and LLE. PDF R Script
Reference Manual PDF

Details

biocViews Clustering, DimensionReduction, FeatureExtraction, Microarray, Software, Visualization
Version 1.52.0
In Bioconductor since BioC 2.7 (R-2.12) (13.5 years)
License GPL (>= 2)
Depends R (>= 2.9.0)
Imports graphics, grDevices, methods, stats, MASS, rgl
System Requirements
URL
See More
Suggests golubEsets
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me loon
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RDRToolbox_1.52.0.tar.gz
Windows Binary RDRToolbox_1.52.0.zip
macOS Binary (x86_64) RDRToolbox_1.52.0.tgz
macOS Binary (arm64) RDRToolbox_1.52.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RDRToolbox
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RDRToolbox
Bioc Package Browser https://code.bioconductor.org/browse/RDRToolbox/
Package Short Url https://bioconductor.org/packages/RDRToolbox/
Package Downloads Report Download Stats