To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RNAinteract")

In most cases, you don't need to download the package archive at all.

RNAinteract

Estimate Pairwise Interactions from multidimensional features

Bioconductor version: Release (3.1)

RNAinteract estimates genetic interactions from multi-dimensional read-outs like features extracted from images. The screen is assumed to be performed in multi-well plates or similar designs. Starting from a list of features (e.g. cell number, area, fluorescence intensity) per well, genetic interactions are estimated. The packages provides functions for reporting interacting gene pairs, plotting heatmaps and double RNAi plots. An HTML report can be written for quality control and analysis.

Author: Bernd Fischer <b.fischer at dkfz.de>

Maintainer: Bernd Fischer <b.fischer at dkfz.de>

Citation (from within R, enter citation("RNAinteract")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RNAinteract")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RNAinteract")

 

PDF R Script RNAinteract
PDF   Reference Manual

Details

biocViews CellBasedAssays, Preprocessing, QualityControl, Software, Visualization
Version 1.16.0
In Bioconductor since BioC 2.8 (R-2.13)
License Artistic-2.0
Depends R (>= 2.12.0), abind, locfit, Biobase
Imports RColorBrewer, ICS, ICSNP, cellHTS2, geneplotter, gplots, grid, hwriter, lattice, latticeExtra, limma, methods, splots(>= 1.13.12)
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me RNAinteractMAPK
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RNAinteract_1.16.0.tar.gz
Windows Binary RNAinteract_1.16.0.zip
Mac OS X 10.6 (Snow Leopard) RNAinteract_1.16.0.tgz
Mac OS X 10.9 (Mavericks) RNAinteract_1.16.0.tgz
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