To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RNAither")

In most cases, you don't need to download the package archive at all.

RNAither

Statistical analysis of high-throughput RNAi screens

Bioconductor version: Release (2.14)

RNAither analyzes cell-based RNAi screens, and includes quality assessment, customizable normalization and statistical tests, leading to lists of significant genes and biological processes.

Author: Nora Rieber and Lars Kaderali, University of Heidelberg, Viroquant Research Group Modeling, Im Neuenheimer Feld 267, 69120 Heidelberg, Germany

Maintainer: Nora Rieber <RNAither at gmx.de>

Citation (from within R, enter citation("RNAither")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RNAither")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RNAither")

 

PDF R Script RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens
PDF   Reference Manual

Details

biocViews Annotation, CellBasedAssays, GO, Preprocessing, QualityControl, Software, Visualization
Version 2.12.0
In Bioconductor since BioC 2.3 (R-2.8)
License Artistic-2.0
Depends R (>= 2.10), topGO, RankProd, prada
Imports geneplotter, limma, biomaRt, car, splots, methods
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RNAither_2.12.0.tar.gz
Windows Binary RNAither_2.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) RNAither_2.12.0.tgz
Mac OS X 10.9 (Mavericks) RNAither_2.12.0.tgz
Browse/checkout source (username/password: readonly)
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