RNAither

Statistical analysis of high-throughput RNAi screens

Bioconductor version: Release (2.14)

RNAither analyzes cell-based RNAi screens, and includes quality assessment, customizable normalization and statistical tests, leading to lists of significant genes and biological processes.

Author: Nora Rieber and Lars Kaderali, University of Heidelberg, Viroquant Research Group Modeling, Im Neuenheimer Feld 267, 69120 Heidelberg, Germany

Maintainer: Nora Rieber <RNAither at gmx.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("RNAither")

To cite this package in a publication, start R and enter:

    citation("RNAither")

Documentation

PDF R Script RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens
PDF   Reference Manual

Details

biocViews Annotation, CellBasedAssays, GO, Preprocessing, QualityControl, Software, Visualization
Version 2.12.0
In Bioconductor since BioC 2.3 (R-2.8)
License Artistic-2.0
Depends R (>= 2.10), topGO, RankProd, prada
Imports geneplotter, limma, biomaRt, car, splots, methods
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System Requirements
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Depends On Me
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Package Downloads

Package Source RNAither_2.12.0.tar.gz
Windows Binary RNAither_2.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) RNAither_2.12.0.tgz
Mac OS X 10.9 (Mavericks)
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