DOI: 10.18129/B9.bioc.RNAprobR    

An R package for analysis of massive parallel sequencing based RNA structure probing data

Bioconductor version: Release (3.6)

This package facilitates analysis of Next Generation Sequencing data for which positional information with a single nucleotide resolution is a key. It allows for applying different types of relevant normalizations, data visualization and export in a table or UCSC compatible bedgraph file.

Author: Lukasz Jan Kielpinski [aut], Nikos Sidiropoulos [cre, aut], Jeppe Vinther [aut]

Maintainer: Nikos Sidiropoulos <nikos.sidiro at gmail.com>

Citation (from within R, enter citation("RNAprobR")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script RNAprobR: An R package for analysis of the massive parallel sequencing based methods of RNA structure probing
PDF   Reference Manual
Text   NEWS


biocViews Coverage, GenomeAnnotation, Normalization, Sequencing, Software
Version 1.10.0
In Bioconductor since BioC 3.1 (R-3.2) (3 years)
License GPL (>=2)
Depends R (>= 3.1.1), GenomicFeatures(>= 1.16.3), plyr (>= 1.8.1), BiocGenerics(>= 0.10.0)
Imports Biostrings(>= 2.32.1), GenomicRanges(>= 1.16.4), IRanges(>= 2.10.5), Rsamtools(>= 1.16.1), rtracklayer(>= 1.24.2), GenomicAlignments(>= 1.5.12), S4Vectors(>= 0.14.7), graphics, stats, utils
Suggests BiocStyle
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RNAprobR_1.10.0.tar.gz
Windows Binary RNAprobR_1.10.0.zip
Mac OS X 10.11 (El Capitan) RNAprobR_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RNAprobR
Package Short Url http://bioconductor.org/packages/RNAprobR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.6 Source Archive

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: