ReQON

Recalibrating Quality Of Nucleotides

Bioconductor version: Release (2.14)

Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.

Author: Christopher Cabanski, Keary Cavin, Chris Bizon

Maintainer: Christopher Cabanski <ccabansk at genome.wustl.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ReQON")

To cite this package in a publication, start R and enter:

    citation("ReQON")

Documentation

PDF R Script ReQON Tutorial
PDF   Reference Manual
Text   NEWS

Details

biocViews Preprocessing, QualityControl, Sequencing, Software
Version 1.10.0
In Bioconductor since BioC 2.9 (R-2.14)
License GPL-2
Depends R (>= 3.0.2), Rsamtools, seqbias
Imports rJava, graphics, stats, utils, grDevices
Suggests BiocStyle
System Requirements Java version >= 1.6
URL
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Package Downloads

Package Source ReQON_1.10.0.tar.gz
Windows Binary ReQON_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ReQON_1.10.0.tgz
Mac OS X 10.9 (Mavericks)
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