RedeR

DOI: 10.18129/B9.bioc.RedeR    

Interactive visualization and manipulation of nested networks

Bioconductor version: Release (3.8)

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>

Citation (from within R, enter citation("RedeR")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("RedeR", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RedeR")

 

HTML R Script RedeR: hierarchical network representation
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization
Version 1.30.0
In Bioconductor since BioC 2.9 (R-2.14) (7 years)
License GPL (>= 2)
Depends R (>= 3.3.3), methods
Imports igraph
LinkingTo
Suggests pvclust, BiocStyle, knitr, rmarkdown
SystemRequirements Java Runtime Environment (>= 6)
Enhances
URL http://genomebiology.com/2012/13/4/R29
Depends On Me Fletcher2013b
Imports Me Mulder2012, PANR, RTN, transcriptogramer
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RedeR_1.30.0.tar.gz
Windows Binary RedeR_1.30.0.zip
Mac OS X 10.11 (El Capitan) RedeR_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RedeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RedeR
Package Short Url http://bioconductor.org/packages/RedeR/
Package Downloads Report Download Stats

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