Rgraphviz

Provides plotting capabilities for R graph objects

Bioconductor version: Release (2.14)

Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package.

Author: Jeff Gentry, Li Long, Robert Gentleman, Seth Falcon, Florian Hahne, Deepayan Sarkar, Kasper Daniel Hansen

Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Rgraphviz")

To cite this package in a publication, start R and enter:

    citation("Rgraphviz")

Documentation

PDF R Script A New Interface to Plot Graphs Using Rgraphviz
PDF R Script How To Plot A Graph Using Rgraphviz
PDF   Reference Manual
Text   NEWS

Details

biocViews GraphAndNetwork, Software, Visualization
Version 2.8.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License EPL
Depends R (>= 2.6.0), methods, utils, graph, grid
Imports stats4, graphics, grDevices
Suggests RUnit, BiocGenerics, XML
System Requirements optionally Graphviz (>= 2.16)
URL
Depends On Me biocGraph, BioMVCClass, CellNOptR, flowCL, flowMerge, gaucho, GOFunction, MineICA, nem, netresponse, paircompviz, pathRender, ROntoTools, SplicingGraphs, TDARACNE
Imports Me apComplex, biocGraph, CompGO, DEGraph, flowWorkspace, GOFunction, hyperdraw, nem, openCyto, paircompviz, pathview, qpgraph, RchyOptimyx, SplicingGraphs
Suggests Me altcdfenvs, annotate, BiocCaseStudies, Category, CNORfeeder, CNORfuzzy, ddgraph, DEGraph, flowCore, GeneNetworkBuilder, geneplotter, GlobalAncova, globaltest, GOstats, GSEABase, KEGGgraph, MLP, NCIgraph, NCIgraphData, oneChannelGUI, pcaGoPromoter, pkgDepTools, RBGL, RBioinf, rBiopaxParser, RDAVIDWebService, RpsiXML, Rtreemix, safe, SNAData, SPIA, SRAdb, Streamer, topGO, vtpnet

Package Downloads

Package Source Rgraphviz_2.8.0.tar.gz
Windows Binary Rgraphviz_2.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) Rgraphviz_2.8.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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