To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Rolexa")

In most cases, you don't need to download the package archive at all.

Rolexa

Statistical analysis of Solexa sequencing data

Bioconductor version: Release (3.0)

Provides probabilistic base calling, quality checks and diagnostic plots for Solexa sequencing data

Author: Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef

Maintainer: Jacques Rougemont <jacques.rougemont at epfl.ch>

Citation (from within R, enter citation("Rolexa")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Rolexa")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rolexa")

 

PDF R Script Rolexa
PDF   Reference Manual

Details

biocViews DataImport, Preprocessing, QualityControl, Sequencing, Software
Version 1.22.0
In Bioconductor since BioC 2.5 (R-2.10)
License GPL-2
Depends R (>= 2.9.0), graphics, grDevices, methods, ShortRead
Imports mclust, Biostrings, graphics, grDevices, IRanges, methods, ShortRead, stats
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Rolexa_1.22.0.tar.gz
Windows Binary Rolexa_1.22.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) Rolexa_1.22.0.tgz
Mac OS X 10.9 (Mavericks) Rolexa_1.22.0.tgz
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