To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RpsiXML")

In most cases, you don't need to download the package archive at all.

RpsiXML

R interface to PSI-MI 2.5 files

Bioconductor version: Release (2.14)

Queries, data structure and interface to visualization of interaction datasets. This package inplements the PSI-MI 2.5 standard and supports up to now 8 databases. Further databases supporting PSI-MI 2.5 standard will be added continuously.

Author: Jitao David Zhang, Stefan Wiemann, Marc Carlson, with contributions from Tony Chiang

Maintainer: Jitao David Zhang <jitao_david.zhang at roche.com>

Citation (from within R, enter citation("RpsiXML")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RpsiXML")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RpsiXML")

 

PDF R Script Application Examples of RpsiXML package
PDF R Script Reading PSI-25 XML files
PDF   Reference Manual
Text   NEWS

Details

biocViews Infrastructure, Proteomics, Software
Version 2.6.0
In Bioconductor since BioC 2.3 (R-2.8)
License LGPL-3
Depends methods, annotate(>= 1.21.0), graph(>= 1.21.0), Biobase, RBGL(>= 1.17.0), XML (>= 2.4.0), hypergraph(>= 1.15.2), AnnotationDbi
Imports
Suggests org.Hs.eg.db, org.Mm.eg.db, org.Dm.eg.db, org.Rn.eg.db, org.Sc.sgd.db, hom.Hs.inp.db, hom.Mm.inp.db, hom.Dm.inp.db, hom.Rn.inp.db, hom.Sc.inp.db, Rgraphviz, ppiStats, ScISI
System Requirements
URL http://www.bioconductor.org
Depends On Me ScISI
Imports Me ScISI
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RpsiXML_2.6.0.tar.gz
Windows Binary RpsiXML_2.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) RpsiXML_2.6.0.tgz
Mac OS X 10.9 (Mavericks) RpsiXML_2.6.0.tgz
Browse/checkout Source (username/password: readonly)
Package Downloads Report Download Stats

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