To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("S4Vectors")

In most cases, you don't need to download the package archive at all.

S4Vectors

 

   

S4 implementation of vectors and lists

Bioconductor version: Release (3.3)

The S4Vectors package defines the Vector and List virtual classes and a set of generic functions that extend the semantic of ordinary vectors and lists in R. Package developers can easily implement vector-like or list-like objects as concrete subclasses of Vector or List. In addition, a few low-level concrete subclasses of general interest (e.g. DataFrame, Rle, and Hits) are implemented in the S4Vectors package itself (many more are implemented in the IRanges package and in other Bioconductor infrastructure packages).

Author: H. Pag├Ęs, M. Lawrence and P. Aboyoun

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("S4Vectors")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("S4Vectors")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("S4Vectors")

 

PDF R Script Rle Tips and Tricks
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, Infrastructure, Software
Version 0.10.2
In Bioconductor since BioC 3.0 (R-3.1) (2 years)
License Artistic-2.0
Depends R (>= 3.3.0), methods, utils, stats, stats4, BiocGenerics(>= 0.15.10)
Imports
LinkingTo
Suggests IRanges, GenomicRanges, RUnit
SystemRequirements
Enhances
URL
Depends On Me altcdfenvs, AnnotationHubData, Biostrings, BiSeq, BSgenome, bumphunter, CexoR, ChIPComp, ChIPpeakAnno, chipseq, ChIPseqR, CSAR, DESeq2, DEXSeq, DirichletMultinomial, DMRcaller, epigenomix, ExperimentHubData, ExpressionAtlas, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, GenomicTuples, girafe, groHMM, Gviz, HDF5Array, htSeqTools, InPAS, IRanges, isomiRs, meshr, MotifDb, OTUbase, pd.ag, pd.aragene.1.0.st, pd.aragene.1.1.st, pd.ath1.121501, pd.barley1, pd.bovgene.1.0.st, pd.bovgene.1.1.st, pd.bovine, pd.bsubtilis, pd.cangene.1.0.st, pd.cangene.1.1.st, pd.canine, pd.canine.2, pd.celegans, pd.chicken, pd.chigene.1.0.st, pd.chigene.1.1.st, pd.chogene.2.0.st, pd.chogene.2.1.st, pd.citrus, pd.cotton, pd.cyngene.1.0.st, pd.cyngene.1.1.st, pd.cyrgene.1.0.st, pd.cyrgene.1.1.st, pd.cytogenetics.array, pd.drogene.1.0.st, pd.drogene.1.1.st, pd.drosgenome1, pd.drosophila.2, pd.e.coli.2, pd.ecoli, pd.ecoli.asv2, pd.elegene.1.0.st, pd.elegene.1.1.st, pd.equgene.1.0.st, pd.equgene.1.1.st, pd.felgene.1.0.st, pd.felgene.1.1.st, pd.fingene.1.0.st, pd.fingene.1.1.st, pd.genomewidesnp.5, pd.genomewidesnp.6, pd.guigene.1.0.st, pd.guigene.1.1.st, pd.hc.g110, pd.hg.focus, pd.hg.u133.plus.2, pd.hg.u133a, pd.hg.u133a.2, pd.hg.u133a.tag, pd.hg.u133b, pd.hg.u219, pd.hg.u95a, pd.hg.u95av2, pd.hg.u95b, pd.hg.u95c, pd.hg.u95d, pd.hg.u95e, pd.hg18.60mer.expr, pd.ht.hg.u133.plus.pm, pd.ht.hg.u133a, pd.ht.mg.430a, pd.hta.2.0, pd.hu6800, pd.huex.1.0.st.v2, pd.hugene.1.0.st.v1, pd.hugene.1.1.st.v1, pd.hugene.2.0.st, pd.hugene.2.1.st, pd.maize, pd.mapping250k.nsp, pd.mapping250k.sty, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.margene.1.0.st, pd.margene.1.1.st, pd.medgene.1.0.st, pd.medgene.1.1.st, pd.medicago, pd.mg.u74a, pd.mg.u74av2, pd.mg.u74b, pd.mg.u74bv2, pd.mg.u74c, pd.mg.u74cv2, pd.mirna.1.0, pd.mirna.2.0, pd.mirna.3.0, pd.mirna.4.0, pd.moe430a, pd.moe430b, pd.moex.1.0.st.v1, pd.mogene.1.0.st.v1, pd.mogene.1.1.st.v1, pd.mogene.2.0.st, pd.mogene.2.1.st, pd.mouse430.2, pd.mouse430a.2, pd.mta.1.0, pd.mu11ksuba, pd.mu11ksubb, pd.nugo.hs1a520180, pd.nugo.mm1a520177, pd.ovigene.1.0.st, pd.ovigene.1.1.st, pd.pae.g1a, pd.plasmodium.anopheles, pd.poplar, pd.porcine, pd.porgene.1.0.st, pd.porgene.1.1.st, pd.rabgene.1.0.st, pd.rabgene.1.1.st, pd.rae230a, pd.rae230b, pd.raex.1.0.st.v1, pd.ragene.1.0.st.v1, pd.ragene.1.1.st.v1, pd.ragene.2.0.st, pd.ragene.2.1.st, pd.rat230.2, pd.rcngene.1.0.st, pd.rcngene.1.1.st, pd.rg.u34a, pd.rg.u34b, pd.rg.u34c, pd.rhegene.1.0.st, pd.rhegene.1.1.st, pd.rhesus, pd.rice, pd.rjpgene.1.0.st, pd.rjpgene.1.1.st, pd.rn.u34, pd.rta.1.0, pd.rusgene.1.0.st, pd.rusgene.1.1.st, pd.s.aureus, pd.soybean, pd.soygene.1.0.st, pd.soygene.1.1.st, pd.sugar.cane, pd.tomato, pd.u133.x3p, pd.vitis.vinifera, pd.wheat, pd.x.laevis.2, pd.x.tropicalis, pd.xenopus.laevis, pd.yeast.2, pd.yg.s98, pd.zebgene.1.0.st, pd.zebgene.1.1.st, pd.zebrafish, plethy, RIPSeeker, RnBeads, segmentSeq, SNPlocs.Hsapiens.dbSNP141.GRCh38, triplex, VariantTools, XtraSNPlocs.Hsapiens.dbSNP141.GRCh38, XVector
Imports Me affycoretools, ALDEx2, AllelicImbalance, AneuFinder, AnnotationDbi, AnnotationForge, AnnotationHub, ArrayTV, BadRegionFinder, ballgown, BasicSTARRseq, biovizBase, BiSeq, BitSeq, BSgenome, bsseq, casper, cgdv17, ChIPQC, ChIPseeker, CINdex, cleaver, clusterProfiler, cn.mops, CNEr, CNPBayes, CNVPanelizer, coMET, compEpiTools, consensusSeekeR, contiBAIT, copynumber, CopywriteR, CoverageView, CRISPRseek, CrispRVariants, csaw, cummeRbund, customProDB, DChIPRep, debrowser, DECIPHER, derfinder, derfinderHelper, derfinderPlot, DiffBind, diffHic, diffloop, DMRcate, DRIMSeq, easyRNASeq, ELMER, EnrichmentBrowser, ensembldb, ensemblVEP, epivizr, epivizrData, epivizrStandalone, erma, ExperimentHub, facopy, fastseg, FindMyFriends, FunciSNP, genbankr, genefilter, GeneRegionScan, GenoGAM, genomation, GenomeInfoDb, genomeIntervals, GenomicAlignments, GenomicFiles, GenomicInteractions, genoset, GGBase, ggbio, GGtools, gmapR, GoogleGenomics, GOTHiC, gQTLBase, gQTLstats, GUIDEseq, gwascat, h5vc, HTSeqGenie, INSPEcT, InteractionSet, IVAS, JunctionSeq, kebabs, LOLA, M3D, MEAL, methylPipe, methylumi, minfi, MinimumDistance, MiRaGE, MMDiff2, mosaics, motifbreakR, MotIV, msa, MSnbase, MultiDataSet, mygene, myvariant, NarrowPeaks, nucleoSim, nucleR, oligoClasses, OrganismDbi, Pbase, pcaExplorer, pd.atdschip.tiling, pdInfoBuilder, PGA, PICS, PING, polyester, pqsfinder, prebs, procoil, PureCN, qcmetrics, qpgraph, QuasR, R3CPET, R453Plus1Toolbox, RareVariantVis, Rariant, Rcade, regionReport, Repitools, RiboProfiling, RMassBank, roar, Rqc, Rsamtools, rtracklayer, SeqArray, seqplots, SeqVarTools, sevenbridges, SGSeq, ShortRead, simulatorZ, SMITE, SNPchip, SNPhood, SNPlocs.Hsapiens.dbSNP.20100427, SNPlocs.Hsapiens.dbSNP.20101109, SNPlocs.Hsapiens.dbSNP.20110815, SNPlocs.Hsapiens.dbSNP.20111119, SNPlocs.Hsapiens.dbSNP141.GRCh38, SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh38, soGGi, SomaticCancerAlterations, SomaticSignatures, SplicingGraphs, STAN, SummarizedExperiment, TarSeqQC, TCGAbiolinks, TFBSTools, transcriptR, TransView, TSSi, VanillaICE, VariantAnnotation, VariantFiltering, wavClusteR, XtraSNPlocs.Hsapiens.dbSNP141.GRCh38, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, XVector
Suggests Me BiocGenerics, RTCGA, scran
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source S4Vectors_0.10.2.tar.gz
Windows Binary S4Vectors_0.10.2.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks) S4Vectors_0.10.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/S4Vectors/tree/release-3.3
Package Short Url http://bioconductor.org/packages/S4Vectors/
Package Downloads Report Download Stats

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