Sushi

DOI: 10.18129/B9.bioc.Sushi    

Tools for visualizing genomics data

Bioconductor version: Release (3.8)

Flexible, quantitative, and integrative genomic visualizations for publication-quality multi-panel figures

Author: Douglas H Phanstiel <dphansti at stanford.edu>

Maintainer: Douglas H Phanstiel <dphansti at stanford.edu>

Citation (from within R, enter citation("Sushi")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("Sushi", version = "3.8")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Sushi")

 

PDF R Script Sushi
PDF   Reference Manual
Text   NEWS

Details

biocViews DataRepresentation, Genetics, HiC, Infrastructure, Sequencing, Software, Visualization
Version 1.20.0
In Bioconductor since BioC 2.14 (R-3.1) (4.5 years)
License GPL (>= 2)
Depends R (>= 2.10), zoo, biomaRt
Imports graphics, grDevices
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me diffloop, Ularcirc
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Sushi_1.20.0.tar.gz
Windows Binary Sushi_1.20.0.zip
Mac OS X 10.11 (El Capitan) Sushi_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Sushi
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Sushi
Package Short Url http://bioconductor.org/packages/Sushi/
Package Downloads Report Download Stats

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