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Software package for transcription factor binding site (TFBS) analysis

Bioconductor version: Release (3.1)

TFBSTools is a package for the analysis and manipulation of transcription factor binding sites and transcription factor profile matrices.

Author: Ge Tan <ge.tan09 at>

Maintainer: Ge Tan <ge.tan09 at>

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PDF R Script transcription factor binding site (TFBS) analysis with the "TFBSTools" package
PDF   Reference Manual
Text   NEWS


biocViews GeneRegulation, MotifAnnotation, MotifDiscovery, Software
Version 1.6.0
In Bioconductor since BioC 2.13 (R-3.0) (1.5 years)
License GPL-2
Depends R (>= 3.0.1)
Imports Biostrings(>= 2.33.3), RSQLite (>= 0.11.4), seqLogo, GenomicRanges(>= 1.17.7), caTools (>= 1.14), XVector(>= 0.5.8), rtracklayer(>= 1.25.3), BSgenome(>= 1.30.0), S4Vectors(>= 0.2.3), IRanges(>= 1.99.28), methods, gtools (>= 3.0.0), CNEr(>= 0.99.8), BiocParallel(>= 0.5.6), DirichletMultinomial(>= 1.7.1), TFMPvalue (>= 0.0.5)
Suggests JASPAR2014(>= 0.99.3), RUnit, BiocGenerics, BiocStyle, knitr
SystemRequirements meme
Depends On Me
Imports Me MatrixRider
Suggests Me
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Package Source TFBSTools_1.6.0.tar.gz
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