TFutils

DOI: 10.18129/B9.bioc.TFutils    

TFutils

Bioconductor version: Release (3.10)

Package to work with TF metadata from various sources.

Author: Vincent Carey [aut], Shweta Gopaulakrishnan [cre, aut]

Maintainer: Shweta Gopaulakrishnan <reshg at channing.harvard.edu>

Citation (from within R, enter citation("TFutils")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TFutils")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TFutils")

 

HTML R Script A note on fimo16
HTML R Script TFutils -- representing TFBS and TF target sets
PDF   Reference Manual
Text   NEWS

Details

biocViews Software, Transcriptomics
Version 1.6.0
In Bioconductor since BioC 3.7 (R-3.5) (1.5 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports methods, dplyr, magrittr, miniUI, shiny, Rsamtools, GSEABase
LinkingTo
Suggests knitr, data.table, testthat, AnnotationDbi, AnnotationFilter, Biobase, GenomicFeatures, GenomicRanges, Gviz, IRanges, Rsamtools, S4Vectors, org.Hs.eg.db, EnsDb.Hsapiens.v75, BiocParallel, BiocStyle, GO.db, GenomicFiles, GenomeInfoDb, SummarizedExperiment, UpSetR, ggplot2, png, gwascat, MotifDb, motifStack, RColorBrewer
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me TxRegInfra
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TFutils_1.6.0.tar.gz
Windows Binary TFutils_1.5.7.zip
Mac OS X 10.11 (El Capitan) TFutils_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TFutils
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TFutils
Package Short Url https://bioconductor.org/packages/TFutils/
Package Downloads Report Download Stats

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