TPP

DOI: 10.18129/B9.bioc.TPP    

Analyze thermal proteome profiling (TPP) experiments

Bioconductor version: Release (3.7)

Analyze thermal proteome profiling (TPP) experiments with varying temperatures (TR) or compound concentrations (CCR).

Author: Dorothee Childs, Nils Kurzawa, Holger Franken, Carola Doce, Mikhail Savitski and Wolfgang Huber

Maintainer: Dorothee Childs <dorothee.childs at embl.de>

Citation (from within R, enter citation("TPP")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TPP")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TPP")

 

PDF R Script TPP_introduction_1D
PDF R Script TPP_introduction_2D
PDF R Script TPP_introduction_NPARC
PDF   Reference Manual
Text   NEWS

Details

biocViews MassSpectrometry, Proteomics, Software
Version 3.8.5
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License Artistic-2.0
Depends R (>= 3.4), Biobase, dplyr, magrittr, tidyr
Imports biobroom, broom, data.table, doParallel, foreach, futile.logger, ggplot2, grDevices, gridExtra, grid, knitr, limma, MASS, mefa, nls2, openxlsx (>= 2.4.0), parallel, plyr, purrr, RColorBrewer, RCurl, reshape2, rmarkdown, sme, splines, stats, stringr, utils, VennDiagram, VGAM
LinkingTo
Suggests BiocStyle, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TPP_3.8.5.tar.gz
Windows Binary TPP_3.8.5.zip
Mac OS X 10.11 (El Capitan) TPP_3.8.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/TPP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TPP
Package Short Url http://bioconductor.org/packages/TPP/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

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