To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("TransView")

In most cases, you don't need to download the package archive at all.

TransView

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets.

Bioconductor version: Release (3.0)

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

Author: Julius Muller

Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>

Citation (from within R, enter citation("TransView")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("TransView")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TransView")

 

PDF R Script An introduction to TransView
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPSeq, Clustering, DNAMethylation, DataImport, GeneExpression, MethylSeq, Microarray, MultipleComparison, RNASeq, Sequencing, Software, Transcription, Visualization
Version 1.10.0
In Bioconductor since BioC 2.11 (R-2.15)
License GPL-3
Depends methods, GenomicRanges
Imports Rsamtools, zlibbioc, gplots, IRanges
Suggests RUnit, pasillaBamSubset
System Requirements
URL http://bioconductor.org/packages/release/bioc/html/TransView.html
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source TransView_1.10.0.tar.gz
Windows Binary TransView_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) TransView_1.10.0.tgz
Mac OS X 10.9 (Mavericks) TransView_1.10.0.tgz
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