Vega

An R package for copy number data segmentation

Bioconductor version: Release (2.14)

Vega (Variational Estimator for Genomic Aberrations) is an algorithm that adapts a very popular variational model (Mumford and Shah) used in image segmentation so that chromosomal aberrant regions can be efficiently detected.

Author: Sandro Morganella

Maintainer: Sandro Morganella <sandro at ebi.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Vega")

To cite this package in a publication, start R and enter:

    citation("Vega")

Documentation

PDF R Script Vega
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Software, aCGH
Version 1.12.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL-2
Depends R (>= 2.10)
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source Vega_1.12.0.tar.gz
Windows Binary Vega_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) Vega_1.12.0.tgz
Mac OS X 10.9 (Mavericks)
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