To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("affyQCReport")

In most cases, you don't need to download the package archive at all.

affyQCReport

 

QC Report Generation for affyBatch objects

Bioconductor version: Release (3.1)

This package creates a QC report for an AffyBatch object. The report is intended to allow the user to quickly assess the quality of a set of arrays in an AffyBatch object.

Author: Craig Parman <craig.parman at bifx.org>, Conrad Halling <conrad.halling at bifx.org>, Robert Gentleman

Maintainer: Craig Parman <craig.parman at bifx.org>

Citation (from within R, enter citation("affyQCReport")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("affyQCReport")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affyQCReport")

 

PDF R Script affyQCReport: Methods for Generating Affymetrix QC Reports
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, QualityControl, Software
Version 1.46.0
In Bioconductor since BioC 1.7 (R-2.2) (10 years)
License LGPL (>= 2)
Depends Biobase(>= 1.13.16), affy, lattice
Imports affy, affyPLM, Biobase, genefilter, graphics, grDevices, lattice, RColorBrewer, simpleaffy, stats, utils, xtable
LinkingTo
Suggests tkWidgets(>= 1.5.23), affydata(>= 1.4.1)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me BiocCaseStudies
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source affyQCReport_1.46.0.tar.gz
Windows Binary affyQCReport_1.46.0.zip
Mac OS X 10.6 (Snow Leopard) affyQCReport_1.46.0.tgz
Mac OS X 10.9 (Mavericks) affyQCReport_1.46.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/affyQCReport/tree/release-3.1
Package Short Url http://bioconductor.org/packages/affyQCReport/
Package Downloads Report Download Stats

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